RNAfitme
Welcome to RNAfitme, a webserver to reconstruct full-atomic RNA 3D structure based on sequence and fixed sugar-phopshate backbone, remodel the structure, and reduce steric clashes.

RNAfitme applies nucleotide conformer libraries and provides complete, stereochemically correct RNA 3D structures. Reconstruction and remodelling can be run for all/selected nucleobases or nucleoside residues.

1)
Upload RNA 3D structure to be reconstructed/remodelled:
from Protein Data Bank
from local file
from example
1 2 3 4
Data uploaded from: (no file selected)
2)
Provide RNA sequence in FASTA format:
from local file
from FASTA example
1 2 3 4
Data uploaded from: (no file selected)
3)
Reconstruct/remodel:
4)
Select nucleotide conformer library:
5)
Minimize 3D model energy:
6)
Send e-mail notification:
7)